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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs141538993 chr19:33143605 G/A 1.24E-6 402 15.6 14.22 5.3 KM Plot
LGG rs141628867 chr20:3363429 C/CT 1.04E-7 406 15.93 11.55 6.83 KM Plot
LGG rs141776535 chr1:169637674 CCGG/C 2.95E-11 401 15.17 18.03 5.93 KM Plot
LGG rs14178 chr16:67969531 A/G 2.42E-11 406 15.17 17.77 6.47 KM Plot
LGG rs1417804 chr1:159003983 C/G 1.56E-5 402 9.63 17.77 14.93 KM Plot
LGG rs141873448 chr5:156034748 A/G 1.84E-5 407 15.6 15.17 11.63 KM Plot
LGG rs1418914 chr10:54693256 G/T 5.29E-5 407 15.67 12.17 11.52 KM Plot
LGG rs142059229 chr2:17934720 C/A 1.43E-8 405 15.2 15.97 7.33 KM Plot
LGG rs142169051 chr3:153666250 C/CA 0 392 15.18 15.37 0.23 KM Plot
LGG rs142221744 chr7:64934481 AT/A 9.18E-8 400 15.57 15.2 2.27 KM Plot
LGG rs142254971 chr10:1146373 GT/G 1.54E-5 400 16.37 14.87 5.93 KM Plot
LGG rs142419832 chr9:83414725 ATCT/A 1.65E-5 396 16.1 14.77 8.5 KM Plot
LGG rs142478701 chr22:42843504 G/C 1.59E-9 400 15.3 16.73 4.4 KM Plot
LGG rs142544910 chr7:64934319 T/G 9.18E-8 400 15.57 15.2 2.27 KM Plot
LGG rs142876424 chr3:153715813 A/T 0 398 15.17 17.07 0.23 KM Plot